https://www.ncbi.nlm.nih.gov/nuccore/?term=Cannabis%20ALT4

https://www.ncbi.nlm.nih.gov/search/all/?term=Cannabis%20BKR

PCA

A caption

A caption

Manhattan plots

Table X. Select results from GAPIT GWAS using the Blink model, sorted by P.value.
SNP P.value -log10(P) MAF nobs H.B.P.Value Effect POS Pos
EH23b.chr4_68382150 0e+00 23.249081 0.4944444 270 0.0000000 -12.577576 296066776 68382150
EH23b.chrX_44482355 0e+00 18.213718 0.3907407 270 0.0000000 9.820800 697415769 44482355
EH23b.chr4_36256098 0e+00 10.430571 0.4925926 270 0.0000012 10.724852 263940724 36256098
EH23b.chrX_12488664 0e+00 9.757216 0.4314815 270 0.0000041 3.692412 665422078 12488664
EH23b.chr7_290913 0e+00 8.442030 0.4500000 270 0.0000674 -3.054565 467410827 290913
EH23b.chr4_34229722 0e+00 8.332322 0.4962963 270 0.0000723 6.205835 261914348 34229722
EH23b.chr4_21024688 0e+00 7.447077 0.4944444 270 0.0004586 -7.791238 248709314 21024688
EH23b.chr4_20005812 0e+00 7.369147 0.4888889 270 0.0004586 -6.603471 247690438 20005812
EH23b.chr4_44070770 0e+00 7.308416 0.4925926 270 0.0004586 -9.179244 271755396 44070770
EH23b.chr4_52582144 1e-07 7.284420 0.4851852 270 0.0004586 -8.944430 280266770 52582144

Table X. Select results from GAPIT GWAS using the Blink model, sorted by P.value.
SNP P.value -log10(P) MAF nobs H.B.P.Value Effect POS Pos
EH23b.chrX_44482355 0.0e+00 14.363844 0.3907407 270 0.0000000 10.051960 697415769 44482355
EH23b.chr7_290840 0.0e+00 9.941508 0.4425926 270 0.0000053 3.088768 467410754 290840
EH23b.chr4_67626398 0.0e+00 8.282825 0.4870370 270 0.0001621 5.739319 295311024 67626398
EH23b.chr9_19245258 0.0e+00 7.428058 0.4907407 270 0.0008700 -2.803471 606227672 19245258
EH23b.chr4_34229722 1.4e-06 5.848023 0.4962963 270 0.0264643 5.163312 261914348 34229722
EH23b.chr4_71883653 5.0e-06 5.304251 0.4796296 270 0.0708253 6.647073 299568279 71883653
EH23b.chr4_34229716 5.3e-06 5.274367 0.4981481 270 0.0708253 4.749994 261914342 34229716
EH23b.chr6_29171329 8.3e-06 5.081324 0.4740741 270 0.0857479 -4.846044 416278465 29171329
EH23b.chr6_63911547 8.5e-06 5.073016 0.3425926 270 0.0857479 4.501584 451018683 63911547
EH23b.chr6_29171313 9.2e-06 5.036430 0.4685185 270 0.0857479 4.727768 416278449 29171313

Table X. Select results from GAPIT GWAS using the Blink model, sorted by P.value.
SNP P.value -log10(P) MAF nobs H.B.P.Value Effect POS Pos
EH23b.chr7_290840 0.0e+00 11.517802 0.4425926 270 0.0000003 3.515752 467410754 290840
EH23b.chrX_44482355 0.0e+00 8.740113 0.3907407 270 0.0000848 6.953954 697415769 44482355
EH23b.chr3_38206825 1.0e-06 5.980347 0.3981481 270 0.0325226 -7.470783 182086451 38206825
EH23b.chr3_52792408 1.8e-06 5.742775 0.3981481 270 0.0421520 8.101710 196672034 52792408
EH23b.chr8_49274182 2.7e-06 5.562957 0.4555556 270 0.0485115 5.503575 580606596 49274182
EH23b.chr4_67626457 3.6e-06 5.446300 0.4981481 270 0.0485115 -6.268758 295311083 67626457
EH23b.chr4_67626449 3.6e-06 5.438710 0.4981481 270 0.0485115 -5.208385 295311075 67626449
EH23b.chr5_63438793 5.5e-06 5.258085 0.4740741 270 0.0622612 4.777079 372256929 63438793
EH23b.chrX_23645257 6.0e-06 5.221193 0.4944444 270 0.0622612 -6.072852 676578671 23645257
EH23b.chrX_4780409 8.5e-06 5.071393 0.4703704 270 0.0791153 5.221185 657713823 4780409

Table X. Select results from GAPIT GWAS using the Blink model, sorted by P.value.
SNP P.value -log10(P) MAF nobs H.B.P.Value Effect POS Pos
EH23b.chrX_44482355 0e+00 7.983461 0.3907407 270 0.0009687 8.196394 697415769 44482355
EH23b.chr3_52792408 1e-07 7.171672 0.3981481 270 0.0031402 9.627813 196672034 52792408
EH23b.chr7_290840 1e-07 6.957554 0.4425926 270 0.0031846 3.310145 467410754 290840
EH23b.chr7_164064 1e-07 6.864545 0.4296296 270 0.0031846 3.314284 467283978 164064
EH23b.chr7_282797 3e-07 6.565001 0.4555556 270 0.0049763 -3.045978 467402711 282797
EH23b.chr7_210724 3e-07 6.494592 0.4296296 270 0.0049763 3.122290 467330638 210724
EH23b.chr8_49274182 4e-07 6.357012 0.4555556 270 0.0053028 6.543083 580606596 49274182
EH23b.chr7_290913 5e-07 6.342062 0.4500000 270 0.0053028 -3.137440 467410827 290913
EH23b.chr3_38206825 6e-07 6.241856 0.3981481 270 0.0053847 -8.461009 182086451 38206825
EH23b.chr7_210684 6e-07 6.238488 0.4296296 270 0.0053847 -2.989227 467330598 210684